New install. Partioning advice please.

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Hi;
On a new FC3 (or FC2) install, on one hard drive, how do I set it up so that certain directory structures do not get erased when installing to a future version of Linux?
And as a follow up question, can I re-partion an existing fc2 system, to allow the same?
I wasn't aware that this was possible, but the FC-3 install notes allows for reading the iso's "from a hard drive location not overwritten by the installation", which prompted this question. This would prove extremely useful of course, not only for the purpose os install iso's.


Thank you much;
-nat


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