Hi,
here are the asked info.
$ cat /etc/fedora-release
Fedora Core release 5 (Bordeaux)
[siavoush@Cluster-Node-1 ~]$ uname -a
Linux Cluster-Node-1 2.6.18.1 #1 SMP Mon Jul 30 09:53:31 IRDT 2007 i686 athlon i386 GNU/Linux
here are the asked info.
$ cat /etc/fedora-release
Fedora Core release 5 (Bordeaux)
[siavoush@Cluster-Node-1 ~]$ uname -a
Linux Cluster-Node-1 2.6.18.1 #1 SMP Mon Jul 30 09:53:31 IRDT 2007 i686 athlon i386 GNU/Linux
Thanks for your help.
Cheers, Siavoush
From: JB <jb.1234abcd@xxxxxxxxx>
To: users@xxxxxxxxxxxxxxxxxxxxxxx
Sent: Mon, 17 January, 2011 3:38:01 PM
Subject: Re: Dell PowerEdge M710 with Intel Xeon 5667 processor
Siavoush Dastmalchi <siavoush11 <at> yahoo.com> writes:
> Dear JB,Many thanks for your kind reply.
> I know that those programs works under linux and am currently using them under
> fedora.
What Fedora version do you have ? What kernel version ?
Please provide these displays for us:
$ $ cat /etc/fedora-release
$ uname -a
> What I want to know is the suitability of Dell PowerEdge M710 with Intel
> Xeon 5667 processor for parallel computation under linux system.
Fair enuf.
But your Fedora version and kernel version will have something to say about
that, at least with regard to hardware supported ...
Please provide info asked for above.
> By the way, I always have problem with this yum command.
> Issuing the following commands gives me error:
> $ yum list "*gromacs*
> "Loading "installonlyn" plugin
According to this link:
http://forums.fedoraforum.org/showthread.php?t=165119
the installonlyn plugin is a "history" (dated back to year 2007).
Please provide info asked for above.
> Setting up repositories
> extras
> [1/2]Cannot open/read repomd.xml file for repository: extrasCannot find
> repomd.xml file for extrasError: Cannot find repomd.xml file for
> extras
Please provide info asked for above.
> Cheers,Siavoush
Btw, on my F14 system the following is also relevant to your questions:
$ yum list "*gromacs*"
...
Available Packages
gromacs.i686 4.5.3-2.fc14 updates
gromacs-bash.noarch 4.5.3-2.fc14 updates
gromacs-common.noarch 4.5.3-2.fc14 updates
gromacs-csh.noarch 4.5.3-2.fc14 updates
gromacs-devel.i686 4.5.3-2.fc14 updates
gromacs-libs.i686 4.5.3-2.fc14 updates
gromacs-mpich2.i686 4.5.3-2.fc14 updates
gromacs-mpich2-devel.i686 4.5.3-2.fc14 updates
gromacs-mpich2-libs.i686 4.5.3-2.fc14 updates
gromacs-openmpi.i686 4.5.3-2.fc14 updates
gromacs-openmpi-devel.i686 4.5.3-2.fc14 updates
gromacs-openmpi-libs.i686 4.5.3-2.fc14 updates
gromacs-tutor.noarch 4.5.3-2.fc14 updates
gromacs-zsh.noarch 4.5.3-2.fc14 updates
$ yum info gromacs
...
Available Packages
Name : gromacs
Arch : i686
Version : 4.5.3
Release : 2.fc14
Size : 328 k
Repo : updates
Summary : Fast, Free and Flexible Molecular Dynamics
URL : http://www.gromacs.org
License : GPLv2+
Description : GROMACS is a versatile and extremely well optimized package to
: perform molecular dynamics computer simulations and subsequent
: trajectory analysis. It is developed for biomolecules like
: proteins, but the extremely high performance means it is used
: also in several other field like polymer chemistry and solid
: state physics.
:
: This package provides single and double precision binaries.
: The documentation is in the package gromacs-common.
:
: mdrun has been compiled with thread parallellization, so it runs
: in parallel on shared memory systems. If you want to run on a
: cluster, you probably want to install one of the MPI
: parallellized packages.
:
: N.B. All binaries have names starting with g_, for example mdrun
: has been renamed to g_mdrun.
JB
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users@xxxxxxxxxxxxxxxxxxxxxxx
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Cheers, Siavoush
From: JB <jb.1234abcd@xxxxxxxxx>
To: users@xxxxxxxxxxxxxxxxxxxxxxx
Sent: Mon, 17 January, 2011 3:38:01 PM
Subject: Re: Dell PowerEdge M710 with Intel Xeon 5667 processor
Siavoush Dastmalchi <siavoush11 <at> yahoo.com> writes:
> Dear JB,Many thanks for your kind reply.
> I know that those programs works under linux and am currently using them under
> fedora.
What Fedora version do you have ? What kernel version ?
Please provide these displays for us:
$ $ cat /etc/fedora-release
$ uname -a
> What I want to know is the suitability of Dell PowerEdge M710 with Intel
> Xeon 5667 processor for parallel computation under linux system.
Fair enuf.
But your Fedora version and kernel version will have something to say about
that, at least with regard to hardware supported ...
Please provide info asked for above.
> By the way, I always have problem with this yum command.
> Issuing the following commands gives me error:
> $ yum list "*gromacs*
> "Loading "installonlyn" plugin
According to this link:
http://forums.fedoraforum.org/showthread.php?t=165119
the installonlyn plugin is a "history" (dated back to year 2007).
Please provide info asked for above.
> Setting up repositories
> extras
> [1/2]Cannot open/read repomd.xml file for repository: extrasCannot find
> repomd.xml file for extrasError: Cannot find repomd.xml file for
> extras
Please provide info asked for above.
> Cheers,Siavoush
Btw, on my F14 system the following is also relevant to your questions:
$ yum list "*gromacs*"
...
Available Packages
gromacs.i686 4.5.3-2.fc14 updates
gromacs-bash.noarch 4.5.3-2.fc14 updates
gromacs-common.noarch 4.5.3-2.fc14 updates
gromacs-csh.noarch 4.5.3-2.fc14 updates
gromacs-devel.i686 4.5.3-2.fc14 updates
gromacs-libs.i686 4.5.3-2.fc14 updates
gromacs-mpich2.i686 4.5.3-2.fc14 updates
gromacs-mpich2-devel.i686 4.5.3-2.fc14 updates
gromacs-mpich2-libs.i686 4.5.3-2.fc14 updates
gromacs-openmpi.i686 4.5.3-2.fc14 updates
gromacs-openmpi-devel.i686 4.5.3-2.fc14 updates
gromacs-openmpi-libs.i686 4.5.3-2.fc14 updates
gromacs-tutor.noarch 4.5.3-2.fc14 updates
gromacs-zsh.noarch 4.5.3-2.fc14 updates
$ yum info gromacs
...
Available Packages
Name : gromacs
Arch : i686
Version : 4.5.3
Release : 2.fc14
Size : 328 k
Repo : updates
Summary : Fast, Free and Flexible Molecular Dynamics
URL : http://www.gromacs.org
License : GPLv2+
Description : GROMACS is a versatile and extremely well optimized package to
: perform molecular dynamics computer simulations and subsequent
: trajectory analysis. It is developed for biomolecules like
: proteins, but the extremely high performance means it is used
: also in several other field like polymer chemistry and solid
: state physics.
:
: This package provides single and double precision binaries.
: The documentation is in the package gromacs-common.
:
: mdrun has been compiled with thread parallellization, so it runs
: in parallel on shared memory systems. If you want to run on a
: cluster, you probably want to install one of the MPI
: parallellized packages.
:
: N.B. All binaries have names starting with g_, for example mdrun
: has been renamed to g_mdrun.
JB
--
users mailing list
users@xxxxxxxxxxxxxxxxxxxxxxx
To unsubscribe or change subscription options:
https://admin.fedoraproject.org/mailman/listinfo/users
Guidelines: http://fedoraproject.org/wiki/Mailing_list_guidelines
-- users mailing list users@xxxxxxxxxxxxxxxxxxxxxxx To unsubscribe or change subscription options: https://admin.fedoraproject.org/mailman/listinfo/users Guidelines: http://fedoraproject.org/wiki/Mailing_list_guidelines
