Ok, so I finally got compiz working on FC6 with my nvidia twinview setup (single card, dual-head). Here's the weird thing: Without effects enabled, each monitor acts like a separate desktop segment. I can maximize a window and it will only maximize to that monitor. The top and bottom bars span only my left screen. My right screen is "extra space". With effects enabled, both monitors together act as a single segment, so maximized windows span both screens. This is obviously not desirable. Any idea why this happens, or more to the point, how to fix it?
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