I did give this command export PHRED_PARAMETER_FILE=/usr/local/etc/PhredPar/phred.dat and then I could run the program well, but the environment variable is set transiently ie when i logout and then relogin i need to give this command again to set the env variables. I think this works only locally, I am using an other program (Partigene) that calls the Phred program to do a set of jobs and here i face a lot of difficulty. How can i set up the env variable Globally and not Locally such that I dont have to set it up everytime I run phred. also: Does editing the file .cshrc and.login help? how do I do that?. Is it safer to edit these files. - thnks ash --- Paul Howarth <paul@xxxxxxxxxxxx> wrote: > On Mon, 2005-07-18 at 10:53 -0700, Ahamarshan jn > wrote: > > just wondering if someone has installed > Phred/Phrap > > and Consed program on FEDORA CORE 2. I have > installed > > the program and also build them succesfully but i > > could not set the environmental variables when i > give > > the command > > setenv PHRED_PARAMETER_FILE > > /usr/local/etc/PhredPar/phred.dat i always get the > > message no command found for setenv and I could > not > > this invoke any program. > > I run set env from c shell. > > The default shell in Fedora is bash, not csh. setenv > is a csh command > that does not exist in bash. The bash equivalent > would be: > > export > PHRED_PARAMETER_FILE=/usr/local/etc/PhredPar/phred.dat > > Paul. > -- > Paul Howarth <paul@xxxxxxxxxxxx> > > -- > fedora-list mailing list > fedora-list@xxxxxxxxxx > To unsubscribe: > http://www.redhat.com/mailman/listinfo/fedora-list > ____________________________________________________ Start your day with Yahoo! - make it your home page http://www.yahoo.com/r/hs
